DNA.today | Oleg Moskvin | Friends Activity https://dna.today/members/sheradmin/activity/friends/ Activity feed for Oleg Moskvin's friends. Sat, 04 Apr 2026 21:09:41 +0000 https://buddypress.org/?v= en-US 30 hourly 2 56ace6a3f1b06b094e90ca3c86d5b5f5 Yury Bukhman posted an update in the group BioComP: Our Nile rat genome paper has been published: see […] https://dna.today/activity/p/88/ Fri, 11 Nov 2022 18:35:09 +0000 Our Nile rat genome paper has been published: see https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-022-01427-8

See also this news story: https://morgridge.org/story/genome-sequencing-supports-nile-rat-animal-model-for-diabetes-research/

]]> 0 edfd9e08fb10ff4139edd25fdf94117e Yury Bukhman posted a new activity comment https://dna.today/2019/12/13/hunting-for-sra-sequence-archives/#comment-46 Tue, 31 Dec 2019 20:11:59 +0000 It seems quite handy. Thanks, Jean-Yves!

In reply to - Jean-Yves Sgro wrote a new post SRA: Sequence Read Archive The Sequence Read Archive (SRA) makes biological sequence data available to the research community to enhance reproducibility and allow for new d […] ]]> e7cdd2fdd976dc15409d313de1a72f9b Yury Bukhman uploaded the file: PAG XXVI notes to BioComP https://dna.today/activity/p/48/ Tue, 13 Mar 2018 22:11:13 +0000 I have presented these notes at the BioComP meeting on 22 Jan 2018. They have been modified, mostly by rearranging the slides and adding hyperlinks to papers and software.

]]> 0 8b0caf9cc31bfe5d76a4e59e2e403435 Yury Bukhman posted an update in the group BioComP: October 23 meeting - O. Moskvin, Deep Learning for […] https://dna.today/activity/p/44/ Fri, 20 Oct 2017 16:54:16 +0000 October 23 meeting – O. Moskvin, Deep Learning for Biological Data Analysis.
———————————————————————————————————————-
Oleg Moskvin will present “Deep Learning for Biological Data Analysis” on Monday Oct 23 at 3:30 PM at WID 4330. Note the location change from pre…[Read more]

]]> 0 3a118973665920066d6284bc9658a2a7 Yury Bukhman posted a new activity comment https://dna.today/2017/06/01/asciinema-record-commands-in-terminal/#comment-43 Mon, 05 Jun 2017 00:31:12 +0000 Looks like an interesting idea. I’ll try it someday.

In reply to - Jean-Yves Sgro wrote a new post RE: asciinema.org  (Linux/MacOS) It may be nice to share/show commands being typed on a Text Terminal and embed this simple “movie” within blog or HTML page. It seems that […] ]]> ac03c5f70dc469c1af8b6efad8a12a69 Yury Bukhman started the topic Meeting notes - 22 May 2017 in the forum BioComP https://dna.today/groups/biocomp/forum/topic/meeting-notes-22-may-2017/ Tue, 23 May 2017 16:14:51 +0000 Oleg gave an excellent presentation on single cell RNA-seq data analysis. It was interesting to hear about data quality issues that are specific to the single cell methodology, such as gene drop-outs, and about specialized normalization and clustering techniques used to deal with this kind of data.

The meetings will continue on 4’th Mondays of…[Read more]

]]> 0 962ca502b900ecf77b4dba50dabedd97 Yury Bukhman posted a new activity comment http://dna.today/2017/05/03/omictools-com-search-engine-for-biological-data-analysis/#comment-42 Thu, 04 May 2017 00:23:59 +0000 Thanks, Jean-Yves! This looks very useful to me. I am looking for QC tools for shotgun metagenomics in particular. Several are listed, along with a review paper.

In reply to - Jean-Yves Sgro wrote a new post Re: omictools.com Finding software that is relevant to any biological analysis can be inspired by reading a paper or perhaps searching within Google. The web […] ]]> 14e3d7f4357718f31ac6fcaa0d896419 Yury Bukhman replied to the topic Meeting notes - 14 Apr 2017 in the forum BioComP http://dna.today/groups/biocomp/forum/topic/meeting-notes-14-apr-2017/#post-190 Thu, 27 Apr 2017 14:31:11 +0000 Note from Yury Bukhman

The paper on using Docker and Continuous Integration to set up reproducible data analysis workflows that I have mentioned is here: http://www.nature.com.ezproxy.library.wisc.edu/nbt/journal/v35/n4/full/nbt.3780.html

 

]]> 0 e98d0d1bce8514ed8e5abd17f5094615 Yury Bukhman started the topic Meeting notes - 14 Apr 2017 in the forum BioComP http://dna.today/groups/biocomp/forum/topic/meeting-notes-14-apr-2017/ Thu, 27 Apr 2017 14:28:34 +0000 Notes from Jean-Yves Sgro

FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”

I installed it and tried it on my Mac last year but eventually it was best to make my material available on the

Biochem  web site.

Info about Jekyll: e.g.  Building Static Sites with Je…[Read more]

]]> 0 76d163aff0bc7d516965e7f37a3a954b Yury Bukhman started the topic Meeting notes - 14 Apr 2017 in the forum BioComP http://dna.today/groups/biocomp/forum/topic/meeting-notes-14-apr-2017/ Thu, 27 Apr 2017 14:28:34 +0000 <span style=”text-decoration: underline;”>Notes from Jean-Yves Sgro</span>

FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”

I installed it and tried it on my Mac last year but eventually it was best to make my material available on the

Biochem  web site.

Info about Jekyll: e.g.  Building Static Si…[Read more]

]]> 0 67f81eb0401a501af260ade55a62b224 Yury Bukhman started the topic Meeting notes - 14 Apr 2017 in the forum BioComP http://dna.today/groups/biocomp/forum/topic/meeting-notes-14-apr-2017/ Thu, 27 Apr 2017 14:28:34 +0000 <span style=”font-size: 120%;”>Notes from Jean-Yves Sgro</span>

FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”

I installed it and tried it on my Mac last year but eventually it was best to make my material available on the

Biochem  web site.

Info about Jekyll: e.g.  Building Static Sites with Je…[Read more]

]]> 0 67346f0210f649bad1e3d5ab999c7ef8 Yury Bukhman posted an update in the group BioComP: Organizational meeting happened on 14 Apr 2017. Notes to be […] https://dna.today/activity/p/16/ Wed, 19 Apr 2017 21:06:52 +0000 Organizational meeting happened on 14 Apr 2017. Notes to be posted soon.

]]> 0 75810eaab8f10721ff3de7c1cbac8adf Yury Bukhman posted an update in the group BioComP: Organizational meeting happened on 14 Apr 2017. https://dna.today/activity/p/15/ Wed, 19 Apr 2017 15:21:47 +0000 Organizational meeting happened on 14 Apr 2017.

]]> 0 2f50c20f243900f19f0a2253d496077a Yury Bukhman joined the group BioComP https://dna.today/activity/p/14/ Wed, 19 Apr 2017 15:16:48 +0000 0 8c118436a42378d7e4498c7ac9b6e4a3 test test joined the group BioComP https://dna.today/activity/p/11/ Tue, 18 Apr 2017 18:13:52 +0000 0