DNA.today | BioComP | Activity http://dna.today/groups/biocomp/ Activity feed for the group, BioComP. Sat, 04 Apr 2026 21:09:41 +0000 https://buddypress.org/?v= en-US 30 hourly 2 56ace6a3f1b06b094e90ca3c86d5b5f5 Yury Bukhman posted an update in the group BioComP: Our Nile rat genome paper has been published: see […] http://dna.today/activity/p/88/ Fri, 11 Nov 2022 18:35:09 +0000 Our Nile rat genome paper has been published: see https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-022-01427-8

See also this news story: https://morgridge.org/story/genome-sequencing-supports-nile-rat-animal-model-for-diabetes-research/

]]> 0 e7cdd2fdd976dc15409d313de1a72f9b Yury Bukhman uploaded the file: PAG XXVI notes to BioComP http://dna.today/activity/p/48/ Tue, 13 Mar 2018 22:11:13 +0000 I have presented these notes at the BioComP meeting on 22 Jan 2018. They have been modified, mostly by rearranging the slides and adding hyperlinks to papers and software.

]]> 0 ff11d2903f4b50216f08eebca970a504 Oleg Moskvin started the topic Meeting notes - 23 Oct 2017 in the forum BioComP https://dna.today/groups/biocomp/forum/topic/meeting-notes-23-oct-2017/ Fri, 27 Oct 2017 01:40:06 +0000 This was the first meeting of the BioComP group in the new location – WID.

Presentation slides – “Deep Learning for Biological Data Analysis”

 

]]> 0 1f10ad83208147575bf4c625c117b144 Oleg Moskvin uploaded the file: October 23, 2017 to BioComP http://dna.today/activity/p/45/ Fri, 27 Oct 2017 01:36:33 +0000 Slides from the October 23, 2017 meeting on Deep Learning in bioinformatics

]]> 0 8b0caf9cc31bfe5d76a4e59e2e403435 Yury Bukhman posted an update in the group BioComP: October 23 meeting - O. Moskvin, Deep Learning for […] http://dna.today/activity/p/44/ Fri, 20 Oct 2017 16:54:16 +0000 October 23 meeting – O. Moskvin, Deep Learning for Biological Data Analysis.
———————————————————————————————————————-
Oleg Moskvin will present “Deep Learning for Biological Data Analysis” on Monday Oct 23 at 3:30 PM at WID 4330. Note the location change from pre…[Read more]

]]> 0 8faadb7cbcd3a590cc95554512df8bbc Oleg Moskvin replied to the topic Organizational in the forum BioComP https://dna.today/groups/biocomp/forum/topic/organizational/#post-225 Mon, 26 Jun 2017 22:20:08 +0000 After analysis of what users actually tend to use and in order to de-clutter the interface, the “Collaborative Wiki” has been removed (it was not sufficiently customizable to add any functionality that is beyond what we already have in forums)

]]> 0 83826fe1ed7c5796db71b4f894cb2076 Oleg Moskvin replied to the topic Meeting notes - 22 May 2017 in the forum BioComP https://dna.today/groups/biocomp/forum/topic/meeting-notes-22-may-2017/#post-219 Mon, 26 Jun 2017 16:35:04 +0000 The slides are here (heavily truncated due to unpublished data)

]]> 0 eec28d7e9562696543ec514aebf34d66 Oleg Moskvin uploaded the file: May 22, 2017 to BioComP http://dna.today/activity/p/40/ Mon, 26 Jun 2017 16:29:50 +0000 Slides (truncated due to unpublished data) of the may 22 meeting

]]> 0 ac03c5f70dc469c1af8b6efad8a12a69 Yury Bukhman started the topic Meeting notes - 22 May 2017 in the forum BioComP https://dna.today/groups/biocomp/forum/topic/meeting-notes-22-may-2017/ Tue, 23 May 2017 16:14:51 +0000 Oleg gave an excellent presentation on single cell RNA-seq data analysis. It was interesting to hear about data quality issues that are specific to the single cell methodology, such as gene drop-outs, and about specialized normalization and clustering techniques used to deal with this kind of data.

The meetings will continue on 4’th Mondays of…[Read more]

]]> 0 892c49acb7e6c9cfbfd1f362bee4a333 Oleg Moskvin replied to the topic Organizational in the forum BioComP http://dna.today/groups/biocomp/forum/topic/organizational/#post-192 Thu, 27 Apr 2017 14:47:15 +0000 Currently, we have 3 parallel platforms on the site operating from the front end:

Collaborative Wiki

Forums

Activity stream

From top to bottom, the purpose shifts from more “static” and “serious” to more dynamic and interactive. At the bottom level, there is no more rich text formatting (for fast twitter-like or facebook-like updates). Those…[Read more]

]]> 0 e893bd7c6b8ced547c28104e74a017d0 Oleg Moskvin replied to the topic Organizational in the forum BioComP http://dna.today/groups/biocomp/forum/topic/organizational/#post-192 Thu, 27 Apr 2017 14:47:15 +0000 Currently, we have 3 parallel platforms on the site operating from the front end:

Collaborative Wiki

Forums

Activity stream

From top to bottom, the purpose shifts from more “static” and “serious” to more dynamic and interactive. At the bottom level, there is no more rich text formatting (for fast twitter-like or facebook-like updates).

 

]]> 0 14e3d7f4357718f31ac6fcaa0d896419 Yury Bukhman replied to the topic Meeting notes - 14 Apr 2017 in the forum BioComP http://dna.today/groups/biocomp/forum/topic/meeting-notes-14-apr-2017/#post-190 Thu, 27 Apr 2017 14:31:11 +0000 Note from Yury Bukhman

The paper on using Docker and Continuous Integration to set up reproducible data analysis workflows that I have mentioned is here: http://www.nature.com.ezproxy.library.wisc.edu/nbt/journal/v35/n4/full/nbt.3780.html

 

]]> 0 e98d0d1bce8514ed8e5abd17f5094615 Yury Bukhman started the topic Meeting notes - 14 Apr 2017 in the forum BioComP http://dna.today/groups/biocomp/forum/topic/meeting-notes-14-apr-2017/ Thu, 27 Apr 2017 14:28:34 +0000 Notes from Jean-Yves Sgro

FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”

I installed it and tried it on my Mac last year but eventually it was best to make my material available on the

Biochem  web site.

Info about Jekyll: e.g.  Building Static Sites with Je…[Read more]

]]> 0 76d163aff0bc7d516965e7f37a3a954b Yury Bukhman started the topic Meeting notes - 14 Apr 2017 in the forum BioComP http://dna.today/groups/biocomp/forum/topic/meeting-notes-14-apr-2017/ Thu, 27 Apr 2017 14:28:34 +0000 <span style=”text-decoration: underline;”>Notes from Jean-Yves Sgro</span>

FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”

I installed it and tried it on my Mac last year but eventually it was best to make my material available on the

Biochem  web site.

Info about Jekyll: e.g.  Building Static Si…[Read more]

]]> 0 67f81eb0401a501af260ade55a62b224 Yury Bukhman started the topic Meeting notes - 14 Apr 2017 in the forum BioComP http://dna.today/groups/biocomp/forum/topic/meeting-notes-14-apr-2017/ Thu, 27 Apr 2017 14:28:34 +0000 <span style=”font-size: 120%;”>Notes from Jean-Yves Sgro</span>

FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”

I installed it and tried it on my Mac last year but eventually it was best to make my material available on the

Biochem  web site.

Info about Jekyll: e.g.  Building Static Sites with Je…[Read more]

]]> 0 b56dee7578fd38b4a1dad7dc9025229d Oleg Moskvin started the topic Organizational in the forum BioComP https://dna.today/groups/biocomp/forum/topic/organizational/ Thu, 20 Apr 2017 18:26:39 +0000 Hello all,

The fighting with 500+ available plugins to the ByddyPress / WordPress social platform is going forward. Despite a priori perceived “unlimited possibilities”, in fact, “you cannot have it all”, so the main update fields in the group feed is left without Rich Text formatting, and all the “serious” pages need to be posted either here, to…[Read more]

]]> 0 72d67326101ba9db2bab35f776a074b3 Oleg Moskvin started the topic Organizational in the forum BioComP https://dna.today/groups/biocomp/forum/topic/organizational/ Thu, 20 Apr 2017 18:26:39 +0000 Hello all,

The fighting with 500+ available plugins to the ByddyPress / WordPress social platform is going forward. Despite a priori perceived “unlimited possibilities”, in fact, “you cannot have it all”, so the main update fields in the group feed is left without Rich Text formatting, and all the “serious” pages need to be posted either here, to…[Read more]

]]> 0 67346f0210f649bad1e3d5ab999c7ef8 Yury Bukhman posted an update in the group BioComP: Organizational meeting happened on 14 Apr 2017. Notes to be […] http://dna.today/activity/p/16/ Wed, 19 Apr 2017 21:06:52 +0000 Organizational meeting happened on 14 Apr 2017. Notes to be posted soon.

]]> 0 75810eaab8f10721ff3de7c1cbac8adf Yury Bukhman posted an update in the group BioComP: Organizational meeting happened on 14 Apr 2017. http://dna.today/activity/p/15/ Wed, 19 Apr 2017 15:21:47 +0000 Organizational meeting happened on 14 Apr 2017.

]]> 0 2f50c20f243900f19f0a2253d496077a Yury Bukhman joined the group BioComP http://dna.today/activity/p/14/ Wed, 19 Apr 2017 15:16:48 +0000 0 8c118436a42378d7e4498c7ac9b6e4a3 test test joined the group BioComP http://dna.today/activity/p/11/ Tue, 18 Apr 2017 18:13:52 +0000 0