Finding software that is relevant to any biological analysis can be inspired by reading a paper or perhaps searching within Google.
The web site https://omictools.com/ contains 16,971 software (omic) tools that are organized in categories shown on the home page. Checking a bit further one can find interesting entries such as:
High-throughput sequencing data analysis… https://omictools.com/sequencing-category
Workflow/pipeline software tools | Whole-genome… https://omictools.com/software-pipelines-category
Whole-genome sequencing data analysis bioinformatics… https://omictools.com/whole-genome-resequencing-category
Within these categories are specific types of analysis, for example RNA-Seq that currently lists 1200 tools: RNA sequencing data analysis bioinformatics software… https://omictools.com/rna-seq-category
The web pages offer a download link specifying Desktop, web, virtual, Docker, Cloud, Dataset as the type of file. However, many “Deskop” software can in fact be compatible with a large Linux installation.
This repository should be useful to any researcher trying to find software not only for Next Gen. Sequencing but for most “biological data” analysis.
Wednesday, May 3rd, 2017