Category Archives: Machine Learning for *omics

Whisper into ChatGPT

Open AI (openai.com) Playground is a place to experiment new features. It is still in “Beta” and offers previews of what might be coming in ChatGPT, as detailed in the following YouTube video demonstrating: Voice recognition and transcribing text (while editing hums…) Use the recognized text as prompt (into ChatGPT directly) Transcribe and summarize an… Read More »

Tool Could Detect ChatGPT-Generated Work

There are concerns about classroom use of AI generated essays. See for example: “A Toolkit for Addressing AI Plagiarism in the Classroom” [Archived]. AIWritingCheck.org was created by education technology nonprofits Quill.org and CommonLit.org to assist teachers in determining whether writing was produced by humans or artificial intelligence, the organizations claimed in a news release. Another… Read More »

AI: chatGPT alternatives

GPT means Generative Pre-trained Transformer It’s been the buzz since Fall 2022, and AI is slowly creeping in our lives. I have even used ChatGPT a few times to ask questions on Python code or regular expression usage with sed. This 18min YouTube video “The AI wars: Google vs Bing (ChatGPT)” mentions 2 other AI… Read More »

ChatGPT resources

This post is to list some useful resources about ChatGPT that I just discovered through LinkedIn posts and YouTube. OpenAI Cookbook: https://github.com/openai/openai-cookbook Prompt and conversation sharing This is a Google Chrome extension: https://sharegpt.com/ Add ChatGPT to RStudio Title: “Adding Chat GPT to RStudio with the GPT Studio add-in package” Link: https://youtu.be/QQfDTLExoNU RTUTOR.AI uses AI to… Read More »

DataChat: Guided English Language© Ai and ML data analysis

A new spin-off company from the University of Wisconsin-Madison proposes a new interface for data analysis based on Guided English Language© (GEL) to command Artificial Intelligence and Machine Learning methods via “utterances” i.e. English-like phrases easier to write than code whether R, python, SQL, or other traditional tools. The web site is at datachat.ai The… Read More »

semester-biology informatics courses

Just found this interesting set of  “semester-biology ” (bio)informatics courses, from the original data carpentry site: Web rendered: https://datacarpentry.org/semester-biology/ GitHub: https://github.com/datacarpentry/semester-biology Derived works: Data Science for Biologists at Virginia Commonwealth University Data Science for Agriculture at Oklahoma State University Data Visualization for Plant Pathologists at the University of Florida Data Science for SAFS at the University of… Read More »

PCA as Metro-Maps & Hierarchical Clustering on Principal Components

The iris dataset is perhaps one of the most famous datasets used to learn and teach statistics and now machine learning. Being curious about this dataset lead me last time to the TableConvert.com  web site that I discussed in my previous post here (and there.) “Metro Maps” Today while revisiting the Wikipedia link for this dataset (Iris_flower_data_set) my… Read More »

omictools.com: Search engine for biological data analysis

Re: omictools.com Finding software that is relevant to any biological analysis can be inspired by reading a paper or perhaps searching within Google. The web site https://omictools.com/ contains 16,971 software (omic) tools that are organized in categories shown on the home page. Checking a bit further one can find interesting entries such as: High-throughput sequencing data analysis…… Read More »