PyImageJ: integrating ImageJ and Python

By | November 11, 2022

Fresh from Nature Methods this week is an article from a consortium of UW-Madison researchers that developed a Python library for image analysis. Their new Python library is linking the Java-based methods of the ImageJ2 software to Python for powerful command-line processing.

PyImageJ sample image


Rueden, CT, Hiner, MC, Evans, EL, Pinkert, MA, Lucas, AM, Carpenter, AE, Cimini, BA, Eliceiri, KW (2022). PyImageJ: A library for integrating ImageJ and Python. Nat Methods, 19, 11:1326-1327. – PMID 28369169

Rueden, C.T., Schindelin, J., Hiner, M.C. et al. ImageJ2: ImageJ for the next generation of scientific image data. BMC Bioinformatics 18, 529 (2017). – PMID 29187165

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