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Yury Bukhman posted an update in the group
BioComP 2 years agoOur Nile rat genome paper has been published: see https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-022-01427-8
See also this news story: https://morgridge.org/story/genome-sequencing-supports-nile-rat-animal-model-for-diabetes-research/
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Yury Bukhman uploaded the file: PAG XXVI notes to
BioComP 6 years, 8 months agoI have presented these notes at the BioComP meeting on 22 Jan 2018. They have been modified, mostly by rearranging the slides and adding hyperlinks to papers and software.
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Oleg Moskvin started the topic Meeting notes – 23 Oct 2017 in the forum
BioComP 7 years agoThis was the first meeting of the BioComP group in the new location – WID.
Presentation slides – “Deep Learning for Biological Data Analysis”
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Oleg Moskvin uploaded the file: October 23, 2017 to
BioComP 7 years agoSlides from the October 23, 2017 meeting on Deep Learning in bioinformatics
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Yury Bukhman posted an update in the group
BioComP 7 years, 1 month agoOctober 23 meeting – O. Moskvin, Deep Learning for Biological Data Analysis.
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Oleg Moskvin will present “Deep Learning for Biological Data Analysis” on Monday Oct 23 at 3:30 PM at WID 4330. Note the location change from pre…[Read more] -
Oleg Moskvin replied to the topic Organizational in the forum
BioComP 7 years, 5 months agoAfter analysis of what users actually tend to use and in order to de-clutter the interface, the “Collaborative Wiki” has been removed (it was not sufficiently customizable to add any functionality that is beyond what we already have in forums)
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Oleg Moskvin replied to the topic Meeting notes – 22 May 2017 in the forum
BioComP 7 years, 5 months agoThe slides are here (heavily truncated due to unpublished data)
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Oleg Moskvin uploaded the file: May 22, 2017 to
BioComP 7 years, 5 months agoSlides (truncated due to unpublished data) of the may 22 meeting
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Yury Bukhman started the topic Meeting notes – 22 May 2017 in the forum
BioComP 7 years, 6 months agoOleg gave an excellent presentation on single cell RNA-seq data analysis. It was interesting to hear about data quality issues that are specific to the single cell methodology, such as gene drop-outs, and about specialized normalization and clustering techniques used to deal with this kind of data.
The meetings will continue on 4’th Mondays of…[Read more]
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Oleg Moskvin replied to the topic Organizational in the forum
BioComP 7 years, 7 months agoCurrently, we have 3 parallel platforms on the site operating from the front end:
From top to bottom, the purpose shifts from more “static” and “serious” to more dynamic and interactive. At the bottom level, there is no more rich text formatting (for fast twitter-like or facebook-like updates). Those…[Read more]
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Oleg Moskvin replied to the topic Organizational in the forum
BioComP 7 years, 7 months agoCurrently, we have 3 parallel platforms on the site operating from the front end:
From top to bottom, the purpose shifts from more “static” and “serious” to more dynamic and interactive. At the bottom level, there is no more rich text formatting (for fast twitter-like or facebook-like updates).
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Yury Bukhman replied to the topic Meeting notes – 14 Apr 2017 in the forum
BioComP 7 years, 7 months agoNote from Yury Bukhman
The paper on using Docker and Continuous Integration to set up reproducible data analysis workflows that I have mentioned is here: http://www.nature.com.ezproxy.library.wisc.edu/nbt/journal/v35/n4/full/nbt.3780.html
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Yury Bukhman started the topic Meeting notes – 14 Apr 2017 in the forum
BioComP 7 years, 7 months agoNotes from Jean-Yves Sgro
FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”
I installed it and tried it on my Mac last year but eventually it was best to make my material available on the
Biochem web site.
Info about Jekyll: e.g. Building Static Sites with Je…[Read more]
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Yury Bukhman started the topic Meeting notes – 14 Apr 2017 in the forum
BioComP 7 years, 7 months ago<span style=”text-decoration: underline;”>Notes from Jean-Yves Sgro</span>
FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”
I installed it and tried it on my Mac last year but eventually it was best to make my material available on the
Biochem web site.
Info about Jekyll: e.g. Building Static Si…[Read more]
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Yury Bukhman started the topic Meeting notes – 14 Apr 2017 in the forum
BioComP 7 years, 7 months ago<span style=”font-size: 120%;”>Notes from Jean-Yves Sgro</span>
FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”
I installed it and tried it on my Mac last year but eventually it was best to make my material available on the
Biochem web site.
Info about Jekyll: e.g. Building Static Sites with Je…[Read more]
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Oleg Moskvin started the topic Organizational in the forum
BioComP 7 years, 7 months agoHello all,
The fighting with 500+ available plugins to the ByddyPress / WordPress social platform is going forward. Despite a priori perceived “unlimited possibilities”, in fact, “you cannot have it all”, so the main update fields in the group feed is left without Rich Text formatting, and all the “serious” pages need to be posted either here, to…[Read more]
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Oleg Moskvin started the topic Organizational in the forum
BioComP 7 years, 7 months agoHello all,
The fighting with 500+ available plugins to the ByddyPress / WordPress social platform is going forward. Despite a priori perceived “unlimited possibilities”, in fact, “you cannot have it all”, so the main update fields in the group feed is left without Rich Text formatting, and all the “serious” pages need to be posted either here, to…[Read more]
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Yury Bukhman posted an update in the group
BioComP 7 years, 7 months agoOrganizational meeting happened on 14 Apr 2017. Notes to be posted soon.
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Yury Bukhman posted an update in the group
BioComP 7 years, 7 months agoOrganizational meeting happened on 14 Apr 2017.
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