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Yury Bukhman posted an update in the group
BioComP 2 years agoOur Nile rat genome paper has been published: see https://bmcbiol.biomedcentral.com/articles/10.1186/s12915-022-01427-8
See also this news story: https://morgridge.org/story/genome-sequencing-supports-nile-rat-animal-model-for-diabetes-research/
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Yury Bukhman commented on the post, Hunting for SRA sequence archives 4 years, 10 months ago
It seems quite handy. Thanks, Jean-Yves!
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Yury Bukhman uploaded the file: PAG XXVI notes to
BioComP 6 years, 8 months agoI have presented these notes at the BioComP meeting on 22 Jan 2018. They have been modified, mostly by rearranging the slides and adding hyperlinks to papers and software.
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Yury Bukhman posted an update in the group
BioComP 7 years, 1 month agoOctober 23 meeting – O. Moskvin, Deep Learning for Biological Data Analysis.
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Oleg Moskvin will present “Deep Learning for Biological Data Analysis” on Monday Oct 23 at 3:30 PM at WID 4330. Note the location change from pre…[Read more] -
Yury Bukhman commented on the post, asciinema: record commands in terminal 7 years, 5 months ago
Looks like an interesting idea. I’ll try it someday.
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Yury Bukhman started the topic Meeting notes – 22 May 2017 in the forum
BioComP 7 years, 6 months agoOleg gave an excellent presentation on single cell RNA-seq data analysis. It was interesting to hear about data quality issues that are specific to the single cell methodology, such as gene drop-outs, and about specialized normalization and clustering techniques used to deal with this kind of data.
The meetings will continue on 4’th Mondays of…[Read more]
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Yury Bukhman commented on the post, omictools.com: Search engine for biological data analysis 7 years, 6 months ago
Thanks, Jean-Yves! This looks very useful to me. I am looking for QC tools for shotgun metagenomics in particular. Several are listed, along with a review paper.
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Yury Bukhman replied to the topic Meeting notes – 14 Apr 2017 in the forum
BioComP 7 years, 7 months agoNote from Yury Bukhman
The paper on using Docker and Continuous Integration to set up reproducible data analysis workflows that I have mentioned is here: http://www.nature.com.ezproxy.library.wisc.edu/nbt/journal/v35/n4/full/nbt.3780.html
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Yury Bukhman started the topic Meeting notes – 14 Apr 2017 in the forum
BioComP 7 years, 7 months agoNotes from Jean-Yves Sgro
FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”
I installed it and tried it on my Mac last year but eventually it was best to make my material available on the
Biochem web site.
Info about Jekyll: e.g. Building Static Sites with Je…[Read more]
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Yury Bukhman started the topic Meeting notes – 14 Apr 2017 in the forum
BioComP 7 years, 7 months ago<span style=”text-decoration: underline;”>Notes from Jean-Yves Sgro</span>
FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”
I installed it and tried it on my Mac last year but eventually it was best to make my material available on the
Biochem web site.
Info about Jekyll: e.g. Building Static Si…[Read more]
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Yury Bukhman started the topic Meeting notes – 14 Apr 2017 in the forum
BioComP 7 years, 7 months ago<span style=”font-size: 120%;”>Notes from Jean-Yves Sgro</span>
FYI: I mentioned the dynamic small print web blog server based on MarkDown called “Jekyll”
I installed it and tried it on my Mac last year but eventually it was best to make my material available on the
Biochem web site.
Info about Jekyll: e.g. Building Static Sites with Je…[Read more]
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Yury Bukhman posted an update in the group
BioComP 7 years, 7 months agoOrganizational meeting happened on 14 Apr 2017. Notes to be posted soon.
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Yury Bukhman posted an update in the group
BioComP 7 years, 7 months agoOrganizational meeting happened on 14 Apr 2017.
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